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        Note that additional data was saved in multiqc_data when this report was generated.


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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.20

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-02-19, 16:05 EST based on data in: /Users/sojeonggwon/biol7210/TeamBGroup1


        General Statistics

        Showing 18/18 rows and 3/5 columns.
        Sample NameN50 (Kbp)Assembly Length (Mbp)M Reads Mapped
        megahit_processed_B053323_contigs
        101.4Kbp
        4.4Mbp
        megahit_processed_B053323_contigs.stat
        1.1 M
        megahit_processed_B055059_contigs
        53.8Kbp
        4.5Mbp
        megahit_processed_B055059_contigs.stat
        1.7 M
        megahit_processed_B069073_contigs
        67.8Kbp
        4.3Mbp
        megahit_processed_B069073_contigs.stat
        1.4 M
        skesa_processed_B053323_contigs
        61.5Kbp
        4.4Mbp
        skesa_processed_B053323_contigs.stat
        1.1 M
        skesa_processed_B055059_contigs
        41.1Kbp
        4.4Mbp
        skesa_processed_B055059_contigs.stat
        1.7 M
        skesa_processed_B069073_contigs
        46.2Kbp
        4.2Mbp
        skesa_processed_B069073_contigs.stat
        1.4 M
        spades_processed_B053323_contigs
        155.8Kbp
        4.5Mbp
        spades_processed_B053323_contigs.stat
        1.1 M
        spades_processed_B055059_contigs
        78.3Kbp
        4.4Mbp
        spades_processed_B055059_contigs.stat
        1.7 M
        spades_processed_B069073_contigs
        93.7Kbp
        4.2Mbp
        spades_processed_B069073_contigs.stat
        1.4 M

        QUAST

        QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.DOI: 10.1093/bioinformatics/btt086.

        Assembly Statistics

        Showing 9/9 rows and 6/6 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)
        megahit_processed_B053323_contigs
        101.4Kbp
        46.9Kbp
        0.0K
        0.0K
        254.9Kbp
        4.4Mbp
        megahit_processed_B055059_contigs
        53.8Kbp
        30.8Kbp
        0.0K
        0.1K
        135.6Kbp
        4.5Mbp
        megahit_processed_B069073_contigs
        67.8Kbp
        38.1Kbp
        0.0K
        0.0K
        155.6Kbp
        4.3Mbp
        skesa_processed_B053323_contigs
        61.5Kbp
        37.1Kbp
        0.0K
        0.0K
        193.5Kbp
        4.4Mbp
        skesa_processed_B055059_contigs
        41.1Kbp
        18.8Kbp
        0.0K
        0.1K
        102.7Kbp
        4.4Mbp
        skesa_processed_B069073_contigs
        46.2Kbp
        22.9Kbp
        0.0K
        0.1K
        137.6Kbp
        4.2Mbp
        spades_processed_B053323_contigs
        155.8Kbp
        86.7Kbp
        0.0K
        0.0K
        379.4Kbp
        4.5Mbp
        spades_processed_B055059_contigs
        78.3Kbp
        47.0Kbp
        0.0K
        0.0K
        178.0Kbp
        4.4Mbp
        spades_processed_B069073_contigs
        93.7Kbp
        58.0Kbp
        0.0K
        0.0K
        185.1Kbp
        4.2Mbp

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Created with MultiQC

        Samtools

        Samtools is a suite of programs for interacting with high-throughput sequencing data.DOI: 10.1093/bioinformatics/btp352.

        Samtools Flagstat

        This module parses the output from samtools flagstat. All numbers in millions.

        Created with MultiQC